| jalview.math.MatrixTest.testSign |
| jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest.executeRequestTest |
| jalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_fromScrolled |
| jalview.ws.sifts.SiftsClientTest.getDbCoordSysTest |
| jalview.ws.sifts.SiftsClientTest.getAtomIndexTest |
| jalview.ws.jws2.ParameterUtilsTest.testWriteParameterSet |
| jalview.datamodel.ConcurrentModificationTest.testEnhancedForLoop_listExtended |
| jalview.ws.gui.Jws2ParamView.testJws2Gui |
| jalview.ws.jws2.ParameterUtilsTest.testCopyOption |
| jalview.math.SparseMatrixTest.testSign |
| jalview.fts.threedbeacons.TDBeaconsPanelTest.getFTSframeTitleTest |
| jalview.ws.sifts.SiftsClientTest.getAtomIndexNullTest |
| jalview.structure.Mapping.pdbEntryPositionMap |
| jalview.datamodel.ConcurrentModificationTest.testEnhancedForLoop_listRenewed |
| mc_view.PDBfileTest.testParse_withAnnotate3D |
| jalview.ws.sifts.SiftsClientTest.getEntityByMostOptimalMatchedIdTest2 |
| jalview.ext.rbvi.chimera.JalviewChimeraView.testGetAttributes |
| jalview.renderer.OverviewRendererTest.testGetColumnColourFromSequence |
| jalview.analysis.CrossRefTest.testFindXrefSequences_uniprotEmblManyToMany |
| jalview.analysis.AlignmentUtilsTests.testFindCdsForProtein |
| jalview.ext.android.SparseDoubleArrayTest.testConstructor |
| jalview.ext.htsjdk.VCFReaderTest.testQuery_indexed |
| jalview.datamodel.SequenceTest.testIsValidCursor |
| jalview.ws.PDBSequenceFetcherTest.testmmCifSeqRetrieve |
| jalview.fts.threedbeacons.TDBeaconsPanelTest.testgetUNIPROTid |
| jalview.gui.JAL1353bugdemo.test |
| jalview.renderer.OverviewResColourFinderTest.testGetBoxColour |
| jalview.structure.StructureSelectionManagerTest.testMapping_EqualsFeatures |
| jalview.ext.htsjdk.TestHtsContigDb.testCreateIndex |
| jalview.ws.seqfetcher.DbRefFetcherTest.testEmblUniprotProductRecovery |
| jalview.analysis.scoremodels.ScoreModelsTest.printAllMatrices_tabDelimited |
| jalview.structure.StructureSelectionManagerTest.testAssociatedMappingToSubSeq |
| jalview.ws.sifts.SiftsClientTest.downloadSiftsFileTest |
| jalview.ext.android.SparseDoubleArrayTest.testDivide |
| jalview.io.FileLoaderTest.testDownloadStructuresIfInputFromURL |
| jalview.fts.service.pdb.PDBFTSRestClientTest.executeRequestTest |
| jalview.ws.dbsources.RemoteFormatTest.testFetchAccession |
| jalview.math.MatrixTest.testPreMultiply_timing |
| jalview.analysis.AAFrequencyTest.testCalculate_withProfileTiming |
| jalview.ext.paradise.TestAnnotate3D.testIdVsContent2GIS |
| jalview.ws.sifts.SiftsClientTest.getEntityByMostOptimalMatchedIdTest1 |
| jalview.util.FormatTest.testFormat_scientificTiming |
| jalview.ws.sifts.SiftsClientTest.getDbVersionTest |
| jalview.util.QuickSortTest.testSort_withDuplicates |
| jalview.datamodel.ConcurrentModificationTest.testEnhancedForLoop_listModified |
| jalview.ext.ensembl.EnsemblGeneTest.testGetGeneIds |
| jalview.ext.rbvi.chimera.ChimeraConnect.testLaunchAndExit |
| jalview.ws.utils.UrlDownloadClientTest.DownloadGarbageUrlTest |
| jalview.ws.jabaws.RNAStructExportImport.testRnaalifoldSettingsRecovery |
| jalview.gui.FreeUpMemoryTest.testFreeMemoryOnClose |
| jalview.ext.ensembl.EnsemblSeqProxyTest.testGetSequenceRecords |
| jalview.ws.sifts.SiftsClientTest.getValidSourceDBRefExceptionXTest |
| jalview.io.CrossRef2xmlTests.testRetrieveAndShowCrossref |
| jalview.ws.jabaws.MinJabawsClientTests.msaTest |
| jalview.gui.FontChooserTest.dumpInvalidFonts |
| jalview.renderer.OverviewResColourFinderTest.testGetResidueBoxColour_group |
| jalview.ws.sifts.SiftsClientTest.getLeadingIntegerFromString |
| jalview.fts.service.pdb.PDBFTSRestClientTest.parsePDBJsonResponseTest |
| jalview.datamodel.ConcurrentModificationTest.testEnhancedForLoop_arrayModified |
| jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest.verifyMockTDBRequest |
| jalview.math.SparseMatrixTest.testGetValue |
| jalview.analysis.CrossRefTest.testFindXrefSequences_withFetch |
| jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest.getAllDefaulDisplayedDataColumns |
| jalview.fts.service.pdb.PDBFTSRestClientTest.externalServiceIntegrationTest |
| jalview.ext.rbvi.chimera.JalviewChimeraView.testSingleSeqViewChimera |
| jalview.ws.sifts.SiftsClientTest.getDbAccessionIdTest |
| jalview.ws.jabaws.RNAStructExportImport.testRNAStructExport |
| jalview.fts.service.pdb.PDBFTSPanelTest.txt_search_ActionPerformedTest |
| jalview.ext.rbvi.chimera.JalviewChimeraView.testTransferFeatures |
| jalview.fts.service.pdb.PDBFTSRestClientTest.parsePDBJsonExceptionStringTest |
| jalview.analysis.AlignmentUtilsTests.testFindCdsPositions_reverseStrandThreePrimeIncomplete |
| jalview.datamodel.ConcurrentModificationTest.testEnhancedForLoop_arrayExtended |
| jalview.commands.EditCommandTest.testPaste_undo_redo |
| jalview.ext.ensembl.EnsemblRestClientTest.testIsEnsemblAvailable |
| jalview.ws.sifts.SiftsClientTest.getGreedyMappingTest |
| jalview.ws.jabaws.DisorderAnnotExportImport.testDisorderAnnotExport |
| jalview.io.BioJsHTMLOutputTest.testBioJsUpdate |
| jalview.ws.sifts.SiftsClientTest.getEntityCountTest |
| jalview.io.Jalview2xmlBase.clearDesktop |
| jalview.io.Jalview2xmlBase.clearDesktop |
| jalview.io.Jalview2xmlBase.clearDesktop |
| jalview.ws.sifts.SiftsClientTest.populateAtomPositionsNullTest2 |
| jalview.ws.dbsources.XfamFetcherTest.testPfamFullAndSeed |
| jalview.ws.sifts.SiftsClientTest.populateAtomPositionsNullTest1 |
| jalview.fts.service.pdb.PDBFTSPanelTest.getFTSframeTitleTest |
| jalview.ws.seqfetcher.DbRefFetcherTest.testEmblCDSUniprotProductRecovery |
| jalview.ws.jabaws.RNAStructExportImport.testRNAAliFoldValidStructure |
| jalview.ws.PDBSequenceFetcherTest.testPdbSeqRetrieve |
| jalview.ext.ensembl.EnsemblRestClientTest.testCheckEnsembl_overload |
| jalview.ws.dbsources.RemoteFormatTest.testUniprotFreeTextSearch |
| jalview.ws.sifts.SiftsClientTest.getDbSourceTest |
| jalview.gui.StructureChooserTest.fetchStructuresInfoTest |
| jalview.ext.ensembl.SpeciesTest.testGetModelOrganisms |
| jalview.ws.PDBSequenceFetcherTest.testRnaSeqRetrieve |
| jalview.ws.dbsources.XfamFetcherTest.testRfamSeed |
| jalview.analysis.AlignmentUtilsTests.testFindCdsForProtein_noUTR |
| jalview.ws.seqfetcher.DbRefFetcherTest.checkUniprotCanonicalFlagSet |
| jalview.util.MapListTest.testSomething |
| jalview.ws.sifts.SiftsClientTest.getSiftsStructureMappingTest |
| jalview.ws.jws2.ParameterUtilsTest.testCopyParameter |
| jalview.analysis.CrossRefTest.testFindXrefSequences_forGeneAndTranscripts |
| jalview.ws.jabaws.JalviewJabawsTestUtils.testAnnotExport |
| jalview.ext.android.SparseDoubleArrayTest.testAdd |
| jalview.ws.sifts.SiftsClientTest.getValidSourceDBRefExceptionTest |
| jalview.ws.sifts.SiftsClientTest.getValidSourceDBRefTest |
| jalview.ws.utils.UrlDownloadClientTest.UrlDownloadTest |
| jalview.datamodel.ConcurrentModificationTest.test_nullCase |
| jalview.util.QuickSortTest.testSort_timingTest |
| jalview.ws.sifts.SiftsClientTest.isValidDBRefEntryTest |
| jalview.fts.service.pdb.PDBFTSRestClientTest.testForExpectedRuntimeException |
| jalview.io.AnnotatedPDBFileInputTest.checkPDBannotationSource |
| jalview.ws.sifts.SiftsClientTest.getAllMappingAccessionTest |
| jalview.io.HtmlFileTest.test |
| jalview.ws.sifts.SiftsClientTest.padWithGapsTest |
| jalview.datamodel.AlignmentTest.testAlignAs_dnaAsProtein_withIntrons |
| jalview.ext.paradise.TestAnnotate3D.test1GIDbyId |
| jalview.io.FormatAdapterTest.testOneFormatRoundTrip |
| jalview.structure.Mapping.testPDBentryMapping |
| jalview.datamodel.ConcurrentModificationTest.testEnhancedForLoop_arrayNulled |
| jalview.structure.AtomSpecTest.testFromChimeraXAtomSpec |
| jalview.analysis.scoremodels.ScoreModelsTest.printAllMatrices_asHtml |
| jalview.structure.AtomSpecTest.testFromChimeraAtomSpec |
| jalview.ws.sifts.SiftsClientTest.getSIFTsFileTest |
| jalview.analysis.AlignmentUtilsTests.testFindCdsPositions_reverseStrand |
| jalview.ext.paradise.TestAnnotate3D.testPDBfileVsRNAML |